1US1
Crystal structure of human vascular adhesion protein-1
- PDB DOI: https://doi.org/10.2210/pdb1US1/pdb
- Classification: OXIDASE
- Organism(s): Homo sapiens
- Expression System: Cricetulus griseus
- Mutation(s): No 
- Deposited: 2003-11-17 Released: 2005-02-16 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.267 
- R-Value Work: 0.241 
- R-Value Observed: 0.242 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
MEMBRANE COPPER AMINE OXIDASE | 763 | Homo sapiens | Mutation(s): 0  EC: 1.4.3.6 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q16853 (Homo sapiens) Explore Q16853  Go to UniProtKB:  Q16853 | |||||
PHAROS:  Q16853 GTEx:  ENSG00000131471  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q16853 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | H [auth A], L [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CU Query on CU | E [auth A], I [auth B] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N | |||
CA Query on CA | F [auth A], G [auth A], J [auth B], K [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
TPQ Query on TPQ | A, B | L-PEPTIDE LINKING | C9 H9 N O5 | TYR |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.267 
- R-Value Work: 0.241 
- R-Value Observed: 0.242 
- Space Group: P 65 2 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 226.099 | α = 90 |
b = 226.099 | β = 90 |
c = 223.004 | γ = 120 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
XDS | data reduction |
XDS | data scaling |
Entry History 
Deposition Data
- Released Date: 2005-02-16  Deposition Author(s): Airenne, T.T., Nymalm, Y., Kidron, H., Soderholm, A., Johnson, M.S., Salminen, T.A.
Revision History (Full details and data files)
- Version 1.0: 2005-02-16
Type: Initial release - Version 1.1: 2011-05-08
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2018-02-28
Changes: Data collection - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Other, Structure summary - Version 2.1: 2023-12-13
Changes: Data collection, Database references, Refinement description, Structure summary