1TG6

Crystallography and mutagenesis point to an essential role for the N-terminus of human mitochondrial ClpP

Structural Biology Knowledgebase: 1TG6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1TG6

Classification: HYDROLASE

Total Structure Weight: 213247.44

Macromolecule Entities
Molecule Chains Length Organism Details
Putative ATP-dependent Clp protease proteolytic subunit A, B, C..., D, E, F, GA, B, C, D, E, F, G 277 Homo sapiens EC#: 3.4.21.92 IUBMB
Gene Name(s): CLPP Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FME
Query on FME

D N-FORMYLMETHIONINE
C6 H11 N O3 S
PYUSHNKNPOHWEZ-YFKPBYRVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B, C, D, E, F GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DIO
Query on DIO

A, B, D, E, F, G 1,4-DIETHYLENE DIOXIDE
C4 H8 O2
RYHBNJHYFVUHQT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, D, F, G 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.224
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 162.57 α = 90.00
b = 119.00 β = 130.16
c = 118.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-05-28
  • Released Date: 2005-03-22
  • Deposition author(s): Kang, S.G., Maurizi, M.R., Thompson, M., Mueser, T., Ahvazi, B.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4