1TD6

Crystal structure of the conserved hypothetical protein MP506/MPN330 (gi: 1674200)from Mycoplasma pneumoniae

• PDB DOI: https://doi.org/10.2210/pdb1TD6/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Mycoplasmoides pneumoniae
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2004-05-21 Released: 2004-12-07 
• Deposition Author(s): Das, D., Oganesyan, N., Yokota, H., Jancarik, J., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 0.298 
• R-Value Work: 0.244 
• R-Value Observed: 0.244 

Literature

Crystal structure of the conserved hypothetical protein MPN330 (GI: 1674200) from Mycoplasma pneumoniae.

Das, D., Oganesyan, N., Yokota, H., Pufan, R., Kim, R., Kim, S.H.

(2004) Proteins 58: 504-508

• PubMed: 15562512 
• DOI: https://doi.org/10.1002/prot.20316
• Primary Citation of Related Structures:  
  1TD6

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Organizational Affiliation: 

Berkeley Structural Genomics Center, Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 35.42 kDa 
• Atom Count: 2,406 
• Modelled Residue Count: 286 
• Deposited Residue Count: 306 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein MG237 homolog	A	306	Mycoplasmoides pneumoniae	Mutation(s): 0  Gene Names: MPN330, MP506
UniProt
Find proteins for P75455 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)) Explore P75455  Go to UniProtKB:  P75455

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 0.298 
• R-Value Work: 0.244 
• R-Value Observed: 0.244 
• Space Group: I 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.84	α = 90
b = 82.84	β = 90
c = 225.04	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-12-07 
Deposition Author(s): Das, D., Oganesyan, N., Yokota, H., Jancarik, J., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

Revision History  

• Version 1.0: 2004-12-07
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-02-14
  Changes: Data collection, Database references