1TC6

Ligand Induced Conformational Shift in the N-terminal Domain of GRP94, Open Conformation ADP-Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.225

Literature

Macromolecules
Sequence Display for 1TC6

Classification: CHAPERONE

Total Structure Weight: 54902.16

Macromolecule Entities
Molecule Chains Length Organism Details
Endoplasmin A, B 236 Canis lupus Fragment: N-terminal Domain of GRP94 Residues (69-337), 287-327 deleted and replaced with 4 glycines
Gene Name(s): HSP90B1 Gene View GRP94 TRA1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PG4
Query on PG4

A, B TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.225
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 159.23 α = 90.00
b = 159.23 β = 90.00
c = 109.07 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-05-20
  • Released Date: 2004-08-24
  • Deposition author(s): Gewirth, D.T., Immormino, R.M., Dollins, D.E., Shaffer, P.L., Walker, M.A., Soldano, K.L.

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance
  • 2017-08-09
    Type: Source and taxonomy