1T91

crystal structure of human small GTPase Rab7(GTP)

Structural Biology Knowledgebase: 1T91 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.243

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1T91

Classification: protein transport

Total Structure Weight: 96197.70

Macromolecule Entities
Molecule Chains Length Organism Details
Ras-related protein Rab-7 A, B, C, D 207 Homo sapiens Mutation: Q67L
Gene Name(s): RAB7A Gene View RAB7

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GTP
Query on GTP

A, B, C, D GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.243
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.69 α = 71.51
b = 56.78 β = 71.72
c = 74.51 γ = 77.75

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-05-14
  • Released Date: 2005-05-17
  • Deposition author(s): Song, H., Hong, W., Wu, M., Wang, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4