1T5M

Structural transitions as determinants of the action of the calcium-dependent antibiotic daptomycin


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 15
  • Selection Criteria: Structures with the Least Restraint Violations

Literature

Macromolecules
Sequence Display for 1T5M

Classification: ANTIBIOTIC

Total Structure Weight: 1656.70

Macromolecule Entities
Molecule Chains Length Organism Details
DAPTOMYCIN A 13 Streptomyces filamentosus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DKA
Query on DKA

A DECANOIC ACID
C10 H20 O2
GHVNFZFCNZKVNT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000217
Query on PRD_000217
A Daptomycin Cyclic lipopeptide /
Antibiotic
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 15
  • Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-05-04
  • Released Date: 2004-08-31
  • Deposition author(s): Jung, D., Rozek, A., Okon, M., Hancock, R.E.

Revision History

  • Version 1_0: 2004-08-31

    Type: Initial release

  • Version 1_1: 2011-06-14

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2011-07-27

    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary

  • Version 1_4: 2012-12-12

    Type: Other