1T40

Crystal structure of human aldose reductase complexed with NADP and IDD552 at ph 5

Structural Biology Knowledgebase: 1T40 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.159

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1T40

Classification: OXIDOREDUCTASE

Total Structure Weight: 37056.39

Macromolecule Entities
Molecule Chains Length Organism Details
Aldose reductase A 316 Homo sapiens EC#: 1.1.1.21 IUBMB
Gene Name(s): AKR1B1 Gene View ALDR1

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ID5
Query on ID5

A [5-FLUORO-2-({[(4,5,7-TRIFLUORO-1,3-BENZOTHIAZOL- 2-YL)METHYL]AMINO}CARBONYL)PHENOXY]ACETIC ACID
IDD552 (Synonym)
C17 H10 F4 N2 O4 S
ZCAGEXZTORJQDZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ID5 IC50: 11 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.159
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 50.00 α = 90.00
b = 67.24 β = 92.50
c = 47.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-04-28
  • Released Date: 2004-08-03
  • Deposition author(s): Ruiz, F., Hazemann, I., Mitschler, A., Chevrier, B., Schneider, T., Joachimiak, A., Karplus, M., Podjarny, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4