1SZW

Crystal structure of E. coli tRNA pseudouridine synthase TruD

Structural Biology Knowledgebase: 1SZW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.192

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1SZW

Classification: LYASE

Total Structure Weight: 85934.48

Macromolecule Entities
Molecule Chains Length Organism Details
tRNA pseudouridine synthase D A, B 379 Escherichia coli EC#: 5.4.99.27 IUBMB
Mutation: M1M, M98M, M254M, M301M
Gene Name(s): truD ygbO b2745 JW2715
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.192
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 63.18 α = 90.00
b = 108.11 β = 90.00
c = 112.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-04-06
  • Released Date: 2004-04-20
  • Deposition author(s): Ericsson, U.B., Nordlund, P., Hallberg, B.M., Structural Proteomics in Europe (SPINE)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor