1SYT

Crystal structure of signalling protein from goat SPG-40 in the presense of N,N',N''-triacetyl-chitotriose at 2.6A resolution

Structural Biology Knowledgebase: 1SYT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 1SYT

Classification: SIGNALING PROTEIN

Total Structure Weight: 41290.98

Macromolecule Entities
Molecule Chains Length Organism Details
BP40 A 361 Capra hircus Mutation: I33V, G131A, Q205N, E206S, ΔD232, V253G, E361R
Gene Name(s): CHI3L1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.180
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 63.11 α = 90.00
b = 66.04 β = 90.00
c = 107.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-04-02
  • Released Date: 2004-04-20
  • Deposition author(s): Kumar, J., Prem Kumar, R., Srivastava, D.B., Sharma, S., Singh, T.P.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4