1RM6

Structure of 4-hydroxybenzoyl-CoA reductase from Thauera aromatica

Structural Biology Knowledgebase: 1RM6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.173
  • R-Value Work: 0.152

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1RM6

Classification: OXIDOREDUCTASE

Total Structure Weight: 273873.41

Macromolecule Entities
Molecule Chains Length Organism Details
4-hydroxybenzoyl-CoA reductase alpha subunit A, D 769 Thauera aromatica EC#: 1.3.7.9 IUBMB
Mutation: G251A
Gene Name(s): hcrA
4-hydroxybenzoyl-CoA reductase beta subunit B, E 324 Thauera aromatica EC#: 1.3.7.9 IUBMB
Gene Name(s): hcrB
4-hydroxybenzoyl-CoA reductase gamma subunit C, F 161 Thauera aromatica EC#: 1.3.7.9 IUBMB
Mutation: R142K, S143I, S144I
Gene Name(s): hcrC

Small Molecules
Ligands 9 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PCD
Query on PCD

A, D (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)- DIOXO-AQUA-MOLYBDENUM(V)
MOLYBDENUM COFACTOR; MOCO (Synonym)
C19 H26 Mo N8 O16 P2 S2
YEBYDVFRFUQMER-NBXMTLLYDD
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FAD
Query on FAD

B, E FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SF4
Query on SF4

B, E IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EPE
Query on EPE

A, D 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FES
Query on FES

C, F FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

D POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.173
  • R-Value Work: 0.152
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 113.01 α = 90.00
b = 151.85 β = 90.00
c = 174.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-11-27
  • Released Date: 2004-12-21
  • Deposition author(s): Unciuleac, M., Warkentin, E., Page, C.C., Dutton, P.L., Boll, M., Ermler, U.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4