1R9D

Glycerol bound form of the B12-independent glycerol dehydratase from Clostridium butyricum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 1R9D

Classification: LYASE

Total Structure Weight: 176493.55

Macromolecule Entities
Molecule Chains Length Organism Details
glycerol dehydratase A, B 787 Clostridium butyricum Gene Name(s): dhaB1 ATD26_17630 ATN24_18670
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.217
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 103.09 α = 90.00
b = 213.42 β = 90.00
c = 199.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-10-28
  • Released Date: 2004-06-01
  • Deposition author(s): Lanzilotta, W.N., O'Brien, J.R., Raynaud, C., Soucaille, P.

Revision History

  • Version 1_0: 2004-06-01

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance