1R9D

Glycerol bound form of the B12-independent glycerol dehydratase from Clostridium butyricum

Structural Biology Knowledgebase: 1R9D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.217

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1R9D

Classification: LYASE

Total Structure Weight: 176494.98

Macromolecule Entities
Molecule Chains Length Organism Details
glycerol dehydratase A, B 787 Clostridium butyricum Gene Name(s): dhaB1 ATD26_17630 ATN24_18670

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.217
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 103.09 α = 90.00
b = 213.42 β = 90.00
c = 199.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-10-28
  • Released Date: 2004-06-01
  • Deposition author(s): Lanzilotta, W.N., O'Brien, J.R., Raynaud, C., Soucaille, P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update