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DDGTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
 
 
DOI:10.2210/pdb1qss/pdb   NDB ID: PD0066
1QSS
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 69321.50
     
    Molecule:5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DDG))-3'
    Polymer:1Type:polydeoxyribonucleotideLength:12
    Chains:B
    Molecule:5'-D(*AP*CP*CP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'
    Polymer:2Type:polydeoxyribonucleotideLength:14
    Chains:C
    Molecule:DNA POLYMERASE I
    Polymer:3Type:polypeptide(L)Length:539
    Chains:A
    EC#:2.7.7.7 Go to IUBMB EC entry  
    Fragment:KLENOW FRAGMENT
    Mutation:A348E
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 2
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 3
    Scientific Name: Thermus aquaticus Go to NCBI Taxonomy entry Expression System: Escherichia coli  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    3KTQ  DDCTP-TRAPPED CLOSED TERNARY COMPLEX OF KLENTAQ 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    DG3     2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE C10 H16 N5 O12 P3 3DLigand Explorer Link out to Ligand Expos:DG3 Link out to SuperLigands:DG3 Link out to SuperHapten:DG3
    MG     MAGNESIUM ION Mg 3DLigand Explorer Link out to Ligand Expos:MG Link out to SuperLigands:MG Link out to SuperHapten:MG
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    DDG 2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE (parent: DG)(type: dnaLinking) C10 H14 N5 O6 P 3D Ligand Explorer Link out to Ligand Expos:DDG Link out to SuperLigands:DDG Link out to SuperHapten:DDG 2D
     
     
  •  
    Move Section Derived Data Hide
     
     
Reset Layout
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Li, Y.,   Mitaxov, V.,   Waksman, G.

    Deposition:   1999-06-23
    Release:   1999-08-16
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   N/A
    View a histogram of Resolution Resolution[Å]: 2.30
    R-Value: 0.228 (obs.)
    R-Free: 0.285
    Space Group: P 31 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 108.56 α = 90.00 
    b = 108.56 β = 90.00 
    c = 90.53 γ = 120.00