THE CRYSTAL STRUCTURE OF A POST-REACTIVE COGNATE DNA-ECO RI COMPLEX AT 2.50 A IN THE PRESENCE OF MN2+ ION
DOI:10.2210/pdb1qps/pdb   NDB ID: PD0055
1QPS
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 33150.00
    Molecule: 5'-D(*TP*CP*GP*CP*GP*)-3'
    Polymer: 1 Type: dna Length: 5
    Chains: M
    Molecule: 5'-D(*AP*AP*TP*TP*CP*GP*CP*GP*)-3'
    Polymer: 2 Type: dna Length: 8
    Chains: N
    Molecule: ENDONUCLEASE ECORI
    Polymer: 3 Type: protein Length: 261
    Chains: A
    EC#: 3.1.21.4   
    Fragment: RESIDUES 17-277
    Organism: Escherichia coli
    Gene Name: ecoRIR
    UniProtKB: Search PDB | P00642   Protein Feature View
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1CKQ   PRE-TRANSITION STATE ECO RI-DNA COGNATE COMPLEX SOLVED TO 1.85 A 
    1CL8   COGNATE ECORI-DNA STRUCTURE WITH THE INNER ADENINE OF RECOGNITION SEQUENCE GAATTC REPLACED WITH BASE ANALOG PURINE 
    1QC9   STRUCTURE OF ECORI SOLVED IN ABSENCE OF DNA 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MN
    Search 
    Download 
    MN Mn
    MANGANESE (II) ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PD0055
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Horvath, M.,  Choi, J.,  Kim, Y.,  Wilkosz, P.,  Rosenberg, J.M.

    Deposition:   1999-05-28
    Release:   1999-06-14
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   2.50
    R-Value: 0.177 (all)
    R-Free: n/a
    Space Group: P 3 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 118.40 α = 90.00 
    b = 118.40 β = 90.00 
    c = 49.70 γ = 120.00