1NX3

Calpain Domain VI in Complex with the Inhibitor PD150606

Structural Biology Knowledgebase: 1NX3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1NX3

Classification: HYDROLASE

Total Structure Weight: 20352.06

Macromolecule Entities
Molecule Chains Length Organism Details
Calcium-dependent protease, small subunit A 173 Sus scrofa Fragment: Domain VI
Gene Name(s): CAPNS1 Gene View CAPN4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ISA
Query on ISA

A 3-(4-IODO-PHENYL)-2-MERCAPTO-PROPIONIC ACID
PD150606 (Synonym)
C9 H9 I O2 S
MXQYDIIKDPMYMF-QMMMGPOBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.210
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 78.58 α = 90.00
b = 78.58 β = 90.00
c = 77.89 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-07
  • Released Date: 2003-08-19
  • Deposition author(s): Todd, B., Moore, D., Deivanayagam, C.C.S., Lin, G.-D., Chattopadhyay, D., Maki, M., Wang, K.K.W., Narayana, S.V.L.

Revision History

  • 2012-05-02
    Type: Polymer description | Details: remove EC number
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4