1NJK

Crystal Structure of YbaW Probable Thioesterase from Escherichia coli

Structural Biology Knowledgebase: 1NJK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.214

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1NJK

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 72543.77

Macromolecule Entities
Molecule Chains Length Organism Details
Hypothetical protein ybaW A, B, C, D 156 Escherichia coli Mutation: M1M, M44M, M130M
Gene Name(s): fadM tesC ybaW b0443 JW0433
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

B, C, D IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.214
  • Space Group: P 31
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 90.13 α = 90.00
b = 90.13 β = 90.00
c = 83.37 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-31
  • Released Date: 2003-07-01
  • Deposition author(s): Kim, Y., Joachimiak, A., Edwards, A., Xu, X., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4