1NE8

YDCE protein from Bacillus subtilis

Structural Biology Knowledgebase: 1NE8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.159

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1NE8

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 13687.82

Macromolecule Entities
Molecule Chains Length Organism Details
conserved hypothetical protein YDCE A 117 Bacillus subtilis EC#: 3.1.27 IUBMB
Gene Name(s): ndoA mazF ydcE BSU04660

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1PG
Query on 1PG

A 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}- ETHOXY)-ETHANOL
C11 H24 O6
SLNYBUIEAMRFSZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACY
Query on ACY

A ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.159
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.63 α = 90.00
b = 56.63 β = 90.00
c = 138.26 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-10
  • Released Date: 2003-01-14
  • Deposition author(s): Gogos, A., Mu, H., Bahna, F., Gomez, C.A., Shapiro, L., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4