Structure of the Epstein-Barr Virus gp42 Protein Bound to the MHC class II Receptor HLA-DR1
1KG0
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  •   Molecular Description Hide
    Classification: Viral Protein/immune System
    Structure Weight: 59977.22
    Molecule: MHC class II Receptor HLA-DR1
    Polymer: 1 Type: protein Length: 180
    Chains: A
    Fragment: ALPHA CHAIN, EXTRACELLULAR DOMAIN
    Organism: Homo sapiens
    Gene Names: HLA-DRA1 Gene View for HLA-DRA
    UniProtKB: Search PDB | P01903   Protein Feature View
    Molecule: MHC class II Receptor HLA-DR1
    Polymer: 2 Type: protein Length: 188
    Chains: B
    Fragment: BETA CHAIN, EXTRACELLULAR DOMAIN
    Organism: Homo sapiens
    Gene Name: Gene View for HLA-DRB1
    UniProtKB: Search PDB | P04229   Protein Feature View
    Molecule: Hemagglutinin HA Peptide
    Polymer: 3 Type: protein Length: 13
    Chains: D
    Fragment: Antigenic Peptide
    Molecule: gp42 Protein
    Polymer: 4 Type: protein Length: 136
    Chains: C
    Fragment: Extracellular Domain
    Organism: Human herpesvirus 4
    Gene Name: BZLF2
    UniProtKB: Search PDB | P03205   Protein Feature View
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 4
    Scientific Name: Human herpesvirus 4   Taxonomy   Common Name: Epstein-barr virus Expression System: Trichoplusia ni  
     
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Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Mullen, M.M.,  Haan, K.M.,  Longnecker, R.,  Jardetzky, T.S.

    Deposition:   2001-11-25
    Release:   2002-03-27
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   2.65
    R-Value: 0.221 (work)
    R-Free: 0.247
    Space Group: P 63 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 170.40 α = 90.00 
    b = 170.40 β = 90.00 
    c = 101.00 γ = 120.00