1KG0

Structure of the Epstein-Barr Virus gp42 Protein Bound to the MHC class II Receptor HLA-DR1

Structural Biology Knowledgebase: 1KG0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.221

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1KG0

Classification: Viral protein / Immune system

Total Structure Weight: 59977.22

Macromolecule Entities
Molecule Chains Length Organism Details
MHC class II Receptor HLA-DR1 A 180 Homo sapiens Fragment: ALPHA CHAIN, EXTRACELLULAR DOMAIN
Gene Name(s): HLA-DRA Gene View HLA-DRA1
MHC class II Receptor HLA-DR1 B 188 Homo sapiens Fragment: BETA CHAIN, EXTRACELLULAR DOMAIN
Gene Name(s): HLA-DRB1 Gene View
Hemagglutinin HA Peptide D 13 synthetic Fragment: Antigenic Peptide
gp42 Protein C 136 Human herpesvirus 4 Fragment: Extracellular Domain
Mutation: L135K
Gene Name(s): BZLF2


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.221
  • Space Group: P 63 2 2

Unit Cell:

Length (Å) Angle (°)
a = 170.40 α = 90.00
b = 170.40 β = 90.00
c = 101.00 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-11-25
  • Released Date: 2002-03-27
  • Deposition author(s): Mullen, M.M., Haan, K.M., Longnecker, R., Jardetzky, T.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4