1JMS

Crystal Structure of the Catalytic Core of Murine Terminal Deoxynucleotidyl Transferase

Structural Biology Knowledgebase: 1JMS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.36 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.214

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1JMS

Classification: TRANSFERASE

Total Structure Weight: 43650.32

Macromolecule Entities
Molecule Chains Length Organism Details
TERMINAL DEOXYNUCLEOTIDYLTRANSFERASE A 381 Mus musculus EC#: 2.7.7.31 IUBMB
Details: short isoform
Gene Name(s): Dntt Tdt

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.36 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.214
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 47.10 α = 90.00
b = 85.20 β = 90.00
c = 111.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-19
  • Released Date: 2002-01-23
  • Deposition author(s): Delarue, M., Boule, J.B., Lescar, J., Expert-Bezancon, N., Sukumar, N., Jourdan, N., Rougeon, F., Papanicolaou, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4