1IJV

HUMAN BETA-DEFENSIN-1

Structural Biology Knowledgebase: 1IJV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.161

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1IJV

Classification: DEFENSIN

Total Structure Weight: 8591.85

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-defensin 1 A, B 36 Homo sapiens Gene Name(s): DEFB1 Gene View BD1 HBD1

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BR
Query on BR

A, B BROMIDE ION
Br
CPELXLSAUQHCOX-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

B POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.161
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 27.12 α = 90.00
b = 47.24 β = 90.00
c = 53.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-04-30
  • Released Date: 2001-10-24
  • Deposition author(s): Hoover, D.M., Lubkowski, J.

Revision History

  • 2011-07-13
    Type: Atom occupancy | Details: Restore author's atom occupancy
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4