1GYP

CRYSTAL STRUCTURE OF GLYCOSOMAL GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM LEISHMANIA MEXICANA: IMPLICATIONS FOR STRUCTURE-BASED DRUG DESIGN AND A NEW POSITION FOR THE INORGANIC PHOSPHATE BINDING SITE

Structural Biology Knowledgebase: 1GYP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Observed: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1GYP

Classification: OXIDOREDUCTASE (ALDEHYDE(D)-NAD+(A))

Total Structure Weight: 158187.08

Macromolecule Entities
Molecule Chains Length Organism Details
GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE A, B, C, D 358 Leishmania mexicana EC#: 1.2.1.12 IUBMB
Gene Name(s): GAPG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B, C, D NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B, C, D PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Observed: 0.198
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 99.00 α = 90.00
b = 126.50 β = 90.00
c = 138.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-08-01
  • Released Date: 1995-12-07
  • Deposition author(s): Kim, H., Feil, I.K., Verlinde, C.L.M.J., Petra, P.H., Hol, W.G.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4