1GXD

PROMMP-2/TIMP-2 COMPLEX

Structural Biology Knowledgebase: 1GXD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.333
  • R-Value Work: 0.275

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1GXD

Classification: HYDROLASE

Total Structure Weight: 186092.40

Macromolecule Entities
Molecule Chains Length Organism Details
72 KDA TYPE IV COLLAGENASE A, B 631 Homo sapiens EC#: 3.4.24.24 IUBMB
Mutation: E375A
Gene Name(s): MMP2 Gene View CLG4A
METALLOPROTEINASE INHIBITOR 2 C, D 194 Homo sapiens Gene Name(s): TIMP2 Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.333
  • R-Value Work: 0.275
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 75.70 α = 90.00
b = 374.58 β = 90.00
c = 191.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-02
  • Released Date: 2002-07-09
  • Deposition author(s): Morgunova, E., Tuuttila, A., Bergmann, U., Tryggvason, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor