1F1J

CRYSTAL STRUCTURE OF CASPASE-7 IN COMPLEX WITH ACETYL-ASP-GLU-VAL-ASP-CHO

Structural Biology Knowledgebase: 1F1J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.185

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1F1J

Classification: APOPTOSIS HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 70269.68

Macromolecule Entities
Molecule Chains Length Organism Details
CASPASE-7 PROTEASE A, B 305 Homo sapiens EC#: 3.4.22.60 IUBMB
Fragment: P20/P10 CATALYTIC DOMAIN
Mutation: M1E, C171S
Gene Name(s): CASP7 Gene View MCH3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ACE-ASP-GLU-VAL-ASP-CHO C, D 5 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000422 (ACE,VAL,ASP,GLU,ASJ) C, D Ac-Asp-Glu-Val-Asp-Aldehyde Peptide-like /
Inhibitor
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.185
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 88.18 α = 90.00
b = 88.18 β = 90.00
c = 186.23 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-19
  • Released Date: 2001-05-23
  • Deposition author(s): Wei, Y., Charifson, P.S.

Revision History

  • 2013-07-03
    Type: Polymer description | Details: --
  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description