1EFN

HIV-1 NEF PROTEIN IN COMPLEX WITH R96I MUTANT FYN SH3 DOMAIN

Structural Biology Knowledgebase: 1EFN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.215

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1EFN

Classification: COMPLEX (SH3 DOMAIN / VIRAL ENHANCER)

Total Structure Weight: 49427.53

Macromolecule Entities
Molecule Chains Length Organism Details
FYN TYROSINE KINASE A, C 59 Homo sapiens EC#: 2.7.10.2 IUBMB
Fragment: SH3 DOMAIN, RESIDUES 85-141
Mutation: R96I
Gene Name(s): FYN Gene View
HIV-1 NEF PROTEIN B, D 152 Human immunodeficiency virus 1 Fragment: CONSERVED CORE DOMAIN OF NEF, RESIDUES 71-203
Mutation: T71R
Gene Name(s): nef

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PBM
Query on PBM

B, D TRIMETHYL LEAD ION
C3 H9 Pb
SNBFOEGVGALPSE-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.215
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 107.80 α = 90.00
b = 107.80 β = 90.00
c = 229.10 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-06-29
  • Released Date: 1997-01-11
  • Deposition author(s): Lee, C.-H., Kuriyan, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4