1DNP

STRUCTURE OF DEOXYRIBODIPYRIMIDINE PHOTOLYASE

Structural Biology Knowledgebase: 1DNP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.172

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1DNP

Classification: LYASE (CARBON-CARBON)

Total Structure Weight: 109690.24

Macromolecule Entities
Molecule Chains Length Organism Details
DNA PHOTOLYASE A, B 471 Escherichia coli EC#: 4.1.99.3 IUBMB
Details: PHOTOREACTIVATING ENZYME
Gene Name(s): phrB phr b0708 JW0698

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MHF
Query on MHF

A, B 5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID
C20 H23 N7 O6
QYNUQALWYRSVHF-OLZOCXBDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.172
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.60 α = 99.10
b = 72.20 β = 101.50
c = 58.50 γ = 72.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-07-03
  • Released Date: 1996-08-01
  • Deposition author(s): Park, H.-W., Sancar, A., Deisenhofer, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4