1DBV

GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE MUTANT WITH ASP 32 REPLACED BY GLY, LEU 187 REPLACED BY ALA, AND PRO 188 REPLACED BY SER COMPLEXED WITH NAD+

Structural Biology Knowledgebase: 1DBV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.140

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1DBV

Classification: OXIDOREDUCTASE

Total Structure Weight: 146947.05

Macromolecule Entities
Molecule Chains Length Organism Details
GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE O, P, Q, R 334 Geobacillus stearothermophilus EC#: 1.2.1.12 IUBMB
Mutation: D32G, L187A, P188S
Details: COMPLEXED WITH NAD+
Gene Name(s): gap
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

O, P, Q, R NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

O, P, Q, R SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.140
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 82.95 α = 90.00
b = 124.68 β = 108.63
c = 82.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-12-20
  • Released Date: 1997-07-07
  • Deposition author(s): Didierjean, C., Rahuel-Clermont, S., Vitoux, B., Dideberg, O., Branlant, G., Aubry, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4