1DAR

ELONGATION FACTOR G IN COMPLEX WITH GDP

Structural Biology Knowledgebase: 1DAR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1DAR

Classification: TRANSLATIONAL GTPASE

Total Structure Weight: 77421.12

Macromolecule Entities
Molecule Chains Length Organism Details
ELONGATION FACTOR G A 691 Thermus thermophilus Gene Name(s): fusA fus TTHA1695
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
GDP N/A in BindingDB
Kd: 11000 nM  BindingMOAD
Kd: 11000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.220
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 76.30 α = 90.00
b = 106.40 β = 90.00
c = 115.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-02-15
  • Released Date: 1996-07-11
  • Deposition author(s): Al-Karadaghi, S., Aevarsson, A., Garber, M., Zheltonosova, J., Liljas, A.

Revision History

  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4