1CYD

CARBONYL REDUCTASE COMPLEXED WITH NADPH AND 2-PROPANOL

• PDB DOI: https://doi.org/10.2210/pdb1CYD/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Mus musculus
• Mutation(s): No 


• Deposited: 1995-09-01 Released: 1996-10-14 
• Deposition Author(s): Tanaka, N., Nonaka, T., Mitsui, Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.202 
• R-Value Work: 0.154 
• R-Value Observed: 0.154 

Literature

Crystal structure of the ternary complex of mouse lung carbonyl reductase at 1.8 A resolution: the structural origin of coenzyme specificity in the short-chain dehydrogenase/reductase family.

Tanaka, N., Nonaka, T., Nakanishi, M., Deyashiki, Y., Hara, A., Mitsui, Y.

(1996) Structure 4: 33-45

• PubMed: 8805511 
• DOI: https://doi.org/10.1016/s0969-2126(96)00007-x
• Primary Citation of Related Structures:  
  1CYD


• PubMed Abstract: 
  

  Mouse lung carbonyl reductase (MLCR) is a member of the short-chain dehydrogenase/reductase (SDR) family. Although it uses both NADPH and NADH as coenzymes, the structural basis of its strong preference for NADPH is unknown.

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Organizational Affiliation: 

Department of BioEngineering, Nagaoka University of Technology, Niigata, Japan.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 107.18 kDa 
• Atom Count: 7,988 
• Modelled Residue Count: 968 
• Deposited Residue Count: 976 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CARBONYL REDUCTASE	A, B, C, D	244	Mus musculus	Mutation(s): 0  EC: 1.1.1.184
UniProt & NIH Common Fund Data Resources
Find proteins for P08074 (Mus musculus) Explore P08074  Go to UniProtKB:  P08074
IMPC:  MGI:107200

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NDP	E [auth A], G [auth B], I [auth C], K [auth D]	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H30 N7 O17 P3 ACFIXJIJDZMPPO-NNYOXOHSSA-N
IPA	F [auth A], H [auth B], J [auth C], L [auth D]	ISOPROPYL ALCOHOL C3 H8 O KFZMGEQAYNKOFK-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.202 
• R-Value Work: 0.154 
• R-Value Observed: 0.154 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.73	α = 90
b = 105.5	β = 91.43
c = 60.87	γ = 90

Software Package:

Software Name	Purpose
X-PLOR	model building
X-PLOR	refinement
WEIS	data reduction
X-PLOR	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 1996-10-14 
Deposition Author(s): Tanaka, N., Nonaka, T., Mitsui, Y.

Revision History  

• Version 1.0: 1996-10-14
  Type: Initial release
  
• Version 1.1: 2008-03-24
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2013-12-04
  Changes: Non-polymer description
• Version 1.4: 2024-02-07
  Changes: Data collection, Database references, Derived calculations, Other