1CD9

2:2 COMPLEX OF G-CSF WITH ITS RECEPTOR

Structural Biology Knowledgebase: 1CD9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.319
  • R-Value Work: 0.237

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1CD9

Classification: CYTOKINE

Total Structure Weight: 86997.04

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (GRANULOCYTE COLONY-STIMULATING FACTOR) A, C 175 Homo sapiens Gene Name(s): CSF3 Gene View C17orf33 GCSF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (G-CSF RECEPTOR) B, D 215 Mus musculus Fragment: CRH REGION (BN DOMAIN:D1-108, BC DOMAIN:D109-215)
Details: N-LINKED GLYCOSYLATION AT B10
Gene Name(s): Csf3r Csfgr
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

B, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.319
  • R-Value Work: 0.237
  • Space Group: I 41 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 125.47 α = 90.00
b = 125.47 β = 90.00
c = 372.77 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-03-08
  • Released Date: 2000-03-08
  • Deposition author(s): Aritomi, M., Kunishima, N., Okamoto, T., Kuroki, R., Ota, Y., Morikawa, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update