1BMF

BOVINE MITOCHONDRIAL F1-ATPASE

Structural Biology Knowledgebase: 1BMF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Observed: 0.172

Literature

Macromolecules
Sequence Display for 1BMF

Classification: ATP PHOSPHORYLASE

Total Structure Weight: 353940.28

Macromolecule Entities
Molecule Chains Length Organism Details
BOVINE MITOCHONDRIAL F1-ATPASE A, B, C 510 Bos taurus EC#: 3.6.3.14 IUBMB
Mutation: S481G
Gene Name(s): ATP5A1 Gene View ATP5A2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BOVINE MITOCHONDRIAL F1-ATPASE D, E, F 482 Bos taurus EC#: 3.6.3.14 IUBMB
Gene Name(s): ATP5B Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BOVINE MITOCHONDRIAL F1-ATPASE G 272 Bos taurus EC#: 3.6.3.14 IUBMB
Gene Name(s): ATP5C1 Gene View ATP5C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: F-type ATPase

Protein Name: ATP synthase (F1c10)


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B, C, F PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

D ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, F MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Observed: 0.172
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 284.22 α = 90.00
b = 107.76 β = 90.00
c = 139.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-03-13
  • Released Date: 1996-12-07
  • Deposition author(s): Abrahams, J.P., Leslie, A.G.W., Lutter, R., Walker, J.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4