1BCC

CYTOCHROME BC1 COMPLEX FROM CHICKEN

Structural Biology Knowledgebase: 1BCC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.16 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.270

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1BCC

Classification: OXIDOREDUCTASE

Total Structure Weight: 233615.12

Macromolecule Entities
Molecule Chains Length Organism Details
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE A 446 Gallus gallus EC#: 1.10.2.2 IUBMB
Mutation: T3Y, L23V, V59L, G72Q, T91S, L106V, L135V, Q136R, D147E, P162G, V174I, R188T, K191T, L203V, R206Q, D210E, S217G, L219V, S220P, G221F, E225D, P233K, C242R, N267L, C282R, A288L, L290S, A299V, N311S, A315S, D316E, L320F, A322F, H323Y, H328R, A349I, T350S, L360F, S382E, A393E, S397E, I399L, V406M, F415I, F425P
Details: MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS
Gene Name(s): UQCRC1 Gene View
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE B 422 Gallus gallus EC#: 1.10.2.2 IUBMB
Mutation: F26I, R28K, A42S, A44G, R46T, L49V, N61S, T99E, D117E, R134P, A139D, R145K, L152F, A157T, N174D, P188S, Y194F, I207V, Q218N, F223L, H240R, L257I, S266G, G282N, S321L, S332Y, D335Q, L352V, P355E, D356N, G367K, D380E, T393N, N412K, G420R, R421Q, I436V
Details: MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS
Gene Name(s): UQCRC2 Gene View
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE C 380 Gallus gallus EC#: 1.10.2.2 IUBMB
Details: MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS
Gene Name(s): MT-CYB Gene View COB CYTB MTCYB
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE D 241 Gallus gallus EC#: 1.10.2.2 IUBMB
Mutation: L17P, L143V, E167D, L216V, A221Y
Details: MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS
Gene Name(s): CYC1 Gene View
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE E 196 Gallus gallus EC#: 1.10.2.2 IUBMB
Mutation: D9N, E17P, V18D, L19D, D20Y, K26R, S29D, E30P, A31S, T42V, V45L, S56T
Details: MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS
Gene Name(s): UQCRFS1 Gene View
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE F 109 Gallus gallus EC#: 1.10.2.2 IUBMB
Mutation: L29Y, H38Y, V59M, S69N, K87V, S88P, A108D
Details: MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS
Gene Name(s): UQCRB Gene View
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE G 81 Gallus gallus EC#: 1.10.2.2 IUBMB
Mutation: V13L, A25P, I34V, L38W, T41L, V53L, V58L, E78V
Details: MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS
Gene Name(s): UQCRQ Gene View
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE H 78 Gallus gallus EC#: 1.10.2.2 IUBMB
Mutation: L59F
Details: MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS
Gene Name(s): UQCRH Gene View
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE I 33 Gallus gallus EC#: 1.10.2.2 IUBMB
Details: MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE J 62 Gallus gallus EC#: 1.10.2.2 IUBMB
Mutation: F30L
Details: MODEL INCLUDES UBIQUINONE AND PHOSPHOLIPIDS
Gene Name(s): UQCR10 Gene View

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Electron Transport Chain Complexes: Complex III (Cytochrome bc1)

Protein Name: Cytochrome bc1


Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BOG
Query on BOG

D B-OCTYLGLUCOSIDE
C14 H28 O6
HEGSGKPQLMEBJL-RKQHYHRCSA-N
Ligand Explorer
 
JSmol
FES
Query on FES

E FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
HEM
Query on HEM

C, D PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
JSmol
PEE
Query on PEE

C, E 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine
DOPE (Synonym)
C41 H83 N O8 P
LVNGJLRDBYCPGB-LDLOPFEMSA-O
Ligand Explorer
 
JSmol
U10
Query on U10

C UBIQUINONE-10
Coenzyme Q10 (Synonym)
C59 H90 O4
ACTIUHUUMQJHFO-UPTCCGCDSA-N
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
UNK
Query on UNK
I L-PEPTIDE LINKING C4 H9 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.16 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.270
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 169.59 α = 90.00
b = 182.52 β = 90.00
c = 240.57 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-03-23
  • Released Date: 1998-08-19
  • Deposition author(s): Zhang, Z., Huang, L., Shulmeister, V.M., Chi, Y.-I., Kim, K.K., Hung, L.-W., Crofts, A.R., Berry, E.A., Kim, S.-H.

Revision History

  • 2014-10-29
    Type: Non-polymer description | Details: Chemical name update
  • 2014-03-19
    Type: Other | Details: Z value
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4