1B08

LUNG SURFACTANT PROTEIN D (SP-D) (FRAGMENT)

Structural Biology Knowledgebase: 1B08 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.209

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1B08

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 51528.90

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (LUNG SURFACTANT PROTEIN D) A, B, C 158 Homo sapiens Fragment: TRIMERIC FRAGMENT CONSISTING OF LECTIN DOMAINS AND ALPHA-HELICAL COILED-COIL
Mutation: S199A, G200E, L201A, P202G, E203S
Gene Name(s): SFTPD Gene View COLEC7 PSPD SFTP4

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, B, C CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.209
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.96 α = 90.00
b = 109.72 β = 92.20
c = 56.09 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-11-18
  • Released Date: 1999-12-01
  • Deposition author(s): Hakansson, K., Lim, N.K., Hoppe, H.-J., Reid, K.B.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values