1APZ
HUMAN ASPARTYLGLUCOSAMINIDASE COMPLEX WITH REACTION PRODUCT
- PDB DOI: https://doi.org/10.2210/pdb1APZ/pdb
- Classification: COMPLEX (HYDROLASE/PEPTIDE)
- Organism(s): Homo sapiens
- Mutation(s): No 
- Deposited: 1995-06-14 Released: 1996-12-23 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.291 
- R-Value Work: 0.212 
- R-Value Observed: 0.212 
wwPDB Validation   3D Report Full Report
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
ASPARTYLGLUCOSAMINIDASE | 162 | Homo sapiens | Mutation(s): 0  EC: 3.5.1.26 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P20933 (Homo sapiens) Explore P20933  Go to UniProtKB:  P20933 | |||||
PHAROS:  P20933 GTEx:  ENSG00000038002  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P20933 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
ASPARTYLGLUCOSAMINIDASE | 141 | Homo sapiens | Mutation(s): 0  EC: 3.5.1.26 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P20933 (Homo sapiens) Explore P20933  Go to UniProtKB:  P20933 | |||||
PHAROS:  P20933 GTEx:  ENSG00000038002  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P20933 | ||||
Sequence AnnotationsExpand | |||||
|
Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | F [auth A], G [auth B], I [auth C] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
ASP Query on ASP | H [auth B], J [auth D] | ASPARTIC ACID C4 H7 N O4 CKLJMWTZIZZHCS-REOHCLBHSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.291 
- R-Value Work: 0.212 
- R-Value Observed: 0.212 
- Space Group: P 61
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 98.4 | α = 90 |
b = 98.4 | β = 90 |
c = 134.2 | γ = 120 |
Software Name | Purpose |
---|---|
HKL | data collection |
X-PLOR | refinement |
HKL | data reduction |
Entry History 
Deposition Data
- Released Date: 1996-12-23  Deposition Author(s): Rouvinen, J., Oinonen, C.
Revision History (Full details and data files)
- Version 1.0: 1996-12-23
Type: Initial release - Version 1.1: 2008-03-24
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Other, Structure summary