1AKY

HIGH-RESOLUTION STRUCTURES OF ADENYLATE KINASE FROM YEAST LIGATED WITH INHIBITOR AP5A, SHOWING THE PATHWAY OF PHOSPHORYL TRANSFER

Structural Biology Knowledgebase: 1AKY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.63 Å
  • R-Value Observed: 0.194

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1AKY

Classification: TRANSFERASE (PHOSPHOTRANSFERASE)

Total Structure Weight: 25054.15

Macromolecule Entities
Molecule Chains Length Organism Details
ADENYLATE KINASE A 220 Saccharomyces cerevisiae EC#: 2.7.4.3 IUBMB
Gene Name(s): ADK1 AKY AKY1 AKY2 YDR226W YD9934.11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AP5
Query on AP5

A BIS(ADENOSINE)-5'-PENTAPHOSPHATE
C20 H29 N10 O22 P5
OIMACDRJUANHTJ-XPWFQUROSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IMD
Query on IMD

A IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.63 Å
  • R-Value Observed: 0.194
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 36.30 α = 110.80
b = 40.50 β = 109.00
c = 45.70 γ = 63.30

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-07-28
  • Released Date: 1995-11-14
  • Deposition author(s): Abele, U., Schulz, G.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4