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X-ray Structure of a Kaposi's sarcoma herpesvirus LANA peptide bound to the nucleosomal core
DOI:10.2210/pdb1zla/pdb   NDB ID: PD0668
1ZLA
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Protein Binding/virus/dna
    Structure Weight: 201531.26
    Molecule: Palindromic 146bp Human alpha-Satellite DNA fragment
    Polymer: 1 Type: dna Length: 146
    Chains: I, J
    Organism: Homo sapiens
    Molecule: histone H3
    Polymer: 2 Type: protein Length: 135
    Chains: A, E
    Organism: Xenopus laevis
    UniProtKB: Protein Feature View | Search PDB | P84233  
    Molecule: Histone H4
    Polymer: 3 Type: protein Length: 102
    Chains: B, F
    Organism: Xenopus laevis
    UniProtKB: Protein Feature View | Search PDB | P62799  
    Molecule: Xenopus laevis-like histone H2A
    Polymer: 4 Type: protein Length: 129
    Chains: C, G
    Organism: Expression vector pET3-H2A
    UniProtKB: Protein Feature View | Search PDB | P06897  
    Molecule: histone H2B
    Polymer: 5 Type: protein Length: 125
    Chains: D, H
    Organism: Xenopus laevis
    UniProtKB: Protein Feature View | Search PDB | P02281  
    Molecule: latent nuclear antigen
    Polymer: 6 Type: protein Length: 22
    Chains: K
    Organism: Human herpesvirus 8
    UniProtKB: Protein Feature View | Search PDB | Q9DUM3  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Expression vector pet3-h2a   Taxonomy   Expression System: Escherichia coli  
    Polymer: 5
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli  
    Polymer: 6
    Scientific Name: Synthetic construct (Human herpesvirus 8)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1aoi  X-ray structure of the nucleosome core particle at 2.8 A 
    1f66  2.6A crystal structure of a nucleosome core particle containing the variant H2A.Z 
    1kx3  X-ray structure of the nucleosome core particle, NCP146, at 2.0A resolution 
    1kx4  X-ray structure of the nucleosome core particle, NCP146B, at 2.6A resolution 
    1kx5  X-ray structure of the nuclesome core particle Ncp147, at 1.9A resolution 
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0668
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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