1Z5B

Topoisomerase VI-B, ADP AlF4- bound dimer form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 1Z5B

Classification: ISOMERASE

Total Structure Weight: 108250.05

Macromolecule Entities
Molecule Chains Length Organism Details
Type II DNA topoisomerase VI subunit B A, B 469 Sulfolobus shibatae EC#: 5.99.1.3 IUBMB
Mutation: D303Y, N435D
Gene Name(s): top6B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ALF
Query on ALF

A, B TETRAFLUOROALUMINATE ION
Al F4
UYOMQIYKOOHAMK-UHFFFAOYSA-J
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.179
  • Space Group: P 32 1 2

Unit Cell:

Length (Å) Angle (°)
a = 74.08 α = 90.00
b = 74.08 β = 90.00
c = 344.38 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-03-17
  • Released Date: 2005-06-14
  • Deposition author(s): Corbett, K.D., Berger, J.M.

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Advisory, Version format compliance