1Z2F

solution structure of CfAFP-501


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Solution Structure of an Antifreeze Protein CfAFP-501 from Choristoneura fumiferana

Li, C.Guo, X.Jia, Z.Xia, B.Jin, C.

(2005) J Biomol NMR 32: 251-256

  • DOI: https://doi.org/10.1007/s10858-005-8206-3
  • Primary Citation of Related Structures:  
    1Z2F

  • PubMed Abstract: 

    Antifreeze proteins (AFPs) are widely employed by various organisms as part of their overwintering survival strategy. AFPs have the unique ability to suppress the freezing point of aqueous solution and inhibit ice recrystallization through binding to the ice seed crystals and restricting their growth. The solution structure of CfAFP-501 from spruce budworm has been determined by NMR spectroscopy. Our result demonstrates that CfAFP-501 retains its rigid and highly regular structure in solution. Overall, the solution structure is similar to the crystal structure except the N- and C-terminal regions. NMR spin-relaxation experiments further indicate the overall rigidity of the protein and identify a collection of residues with greater flexibilities. Furthermore, Pro91 shows a cis conformation in solution instead of the trans conformation determined in the crystal structure.


  • Organizational Affiliation

    Beijing Nuclear Magnetic Resonance Center, Beijing, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Antifreeze Protein Isoform 501121Choristoneura fumiferanaMutation(s): 0 
UniProt
Find proteins for Q9GSA6 (Choristoneura fumiferana)
Explore Q9GSA6 
Go to UniProtKB:  Q9GSA6
Entity Groups  
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UniProt GroupQ9GSA6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Released Date: 2005-10-11 
  • Deposition Author(s): Li, C., Jin, C.

Revision History  (Full details and data files)

  • Version 1.0: 2005-10-11
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-03-02
    Changes: Data collection, Database references, Derived calculations