1Z1F

Crystal structure of stilbene synthase from Arachis hypogaea (resveratrol-bound form)

Structural Biology Knowledgebase: 1Z1F SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.192

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1Z1F

Classification: TRANSFERASE

Total Structure Weight: 43303.97

Macromolecule Entities
Molecule Chains Length Organism Details
stilbene synthase A 390 Arachis hypogaea EC#: 2.3.1.95 IUBMB
Gene Name(s):

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
STL
Query on STL

A RESVERATROL
C14 H12 O3
LUKBXSAWLPMMSZ-OWOJBTEDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CIT
Query on CIT

A CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.192
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 100.75 α = 90.00
b = 100.75 β = 90.00
c = 74.08 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-03-03
  • Released Date: 2005-08-30
  • Deposition author(s): Shomura, Y., Torayama, I., Suh, D.Y., Xiang, T., Kita, A., Sankawa, U., Miki, K.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4