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Ro autoantigen complexed with RNAs
DOI:10.2210/pdb1yvp/pdb   NDB ID: PR0151
1YVP
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA Binding Protein/rna
    Structure Weight: 142019.42
    Molecule: Y RNA sequence, first strand
    Polymer: 1 Type: rna Length: 10
    Chains: C, E, G, H
    Details: chains G and H are single strands bound by protein
    Molecule: Y RNA sequence, second strand
    Polymer: 2 Type: rna Length: 10
    Chains: D, F
    Molecule: 60-kDa SS-A/Ro ribonucleoprotein
    Polymer: 3 Type: protein Length: 538
    Chains: A, B
    Details: protein A binds RNA chain G, B binds H
    Organism: Xenopus laevis
    Gene Name: trove2
    UniProtKB: Protein Feature View | Search PDB | P42700  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

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  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Trichoplusia ni  
     
  •   Related PDB Entries Hide
    Identifier Details
    1YVR  Ro autoantigen, no RNA 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ACT
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    ACT C2 H3 O2
    ACETATE ION
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    IU
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    IU C9 H12 I N2 O9 P U rnaLinking
     
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  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PR0151
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Stein, A.J.,  Fuchs, G.,  Fu, C.,  Wolin, S.L.,  Reinisch, K.M.

    Deposition:   2005-02-16
    Release:   2005-06-07
    Last Modified (REVDAT):   2011-12-28
     
  •   Revision History    Hide
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    2011-12-28
    Advisory
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.20
    R-Value: 0.202 (obs.)
    R-Free: 0.238
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 60.30 α = 90.00 
    b = 153.65 β = 92.80 
    c = 80.56 γ = 90.00