NMR Ensemble

1Y8D

Dimeric parallel-stranded tetraplex with 3+1 5' G-tetrad interface, single-residue chain reversal loops and GAG triad in the context of A(GGGG) pentad

Structural Biology Knowledgebase: 1Y8D SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 10
  • Selection Criteria: All Calculated Structures Submitted Back Calculated Data Agree with Experimental Noesy Spectrum Structures with Acceptable Covalent Geometry Structures with Favorable Non Bond Energy

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1Y8D

Classification: DNA

Total Structure Weight: 10280.71

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*GP*GP*GP*TP*GP*GP*GP*AP*GP*GP*AP*GP*GP*GP*T)-3' A, B 16 synthetic


Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 10
  • Selection Criteria: all calculated structures submitted,back calculated data agree with experimental NOESY spectrum,structures with acceptable covalent geometry,structures with favorable non-bond energy

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2004-12-11
  • Released Date: 2005-02-01
  • Deposition author(s): Phan, A.T., Kuryavyi, V.V., Ma, J.-B., Faure, A., Andreola, M.-L., Patel, D.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4