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Dimeric parallel-stranded tetraplex with 3+1 5' G-tetrad interface, single-residue chain reversal loops and GAG triad in the context of A(GGGG) pentad
DOI:10.2210/pdb1y8d/pdb   NDB ID: 1Y8D
1Y8D
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 10280.70
    Molecule: 5'-D(*GP*GP*GP*GP*TP*GP*GP*GP*AP*GP*GP*AP*GP*GP*GP*T)-3'
    Polymer: 1 Type: dna Length: 16
    Chains: A, B
    Fragment: HIV INTEGRASE INHIBITOR SEQUENCE
     

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  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1EEG  A TETRAPLEX CONTAINING A GAG TRIAD IN THE CONTEXT OF AN A(GGGG)A DNA HEXAD 
    1JJP  A TETRAPLEX CONTAINING A GAG TRIAD IN THE CONTEXT OF AN A(GGGG) DNA PENTAD 
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: 1Y8D
     
 
Data in orange boxes are gathered from external resources (when available).
 
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  •   Deposition Summary Hide
    Authors:   Phan, A.T.,  Kuryavyi, V.V.,  Ma, J.-B.,  Faure, A.,  Andreola, M.-L.,  Patel, D.J.

    Deposition:   2004-12-11
    Release:   2005-02-01
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   SOLUTION NMR
    Exp. Data:
      NMR Restraints
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    Conformers Calculated:     100
    Conformers Submitted:     10
    Selection Criteria: all calculated structures submitted,back calculated data agree with experimental NOESY spectrum,structures with acceptable covalent geometry,structures with favorable non-bond energy
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    Method: SOLUTION NMR