1X0V

Crystal Structure of Homo Sapien Glycerol-3-Phosphate Dehydrogenase 1

Structural Biology Knowledgebase: 1X0V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.205

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1X0V

Classification: Oxidoreductase

Total Structure Weight: 78229.58

Macromolecule Entities
Molecule Chains Length Organism Details
Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic A, B 354 Homo sapiens EC#: 1.1.1.8 IUBMB
Mutation: M1M, M38M, M144M, M148M, M181M, M233M, M235M, M323M, M349M
Gene Name(s): GPD1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.205
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 113.49 α = 90.00
b = 113.49 β = 90.00
c = 155.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-03-30
  • Released Date: 2006-04-11
  • Deposition author(s): Rao, Z., Ou, X.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4