1X0N

NMR structure of growth factor receptor binding protein SH2 domain complexed with the inhibitor


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 20
  • Selection Criteria: Structures with the Lowest Energy

Literature

Macromolecules
Sequence Display for 1X0N

Classification: PEPTIDE BINDING PROTEIN

Total Structure Weight: 12701.27

Macromolecule Entities
Molecule Chains Length Organism Details
Growth factor receptor-bound protein 2 A 104 Homo sapiens Fragment: SH2 DOMAIN
Gene Name(s): GRB2 Gene View ASH
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DTF
Query on DTF

A 4-[(10S,14S,18S)-18-(2-AMINO-2-OXOETHYL)- 14-(1-NAPHTHYLMETHYL)-8,17,20-TRIOXO-7,16,19- TRIAZASPIRO[5.14]ICOS-11-EN-10-YL]BENZYLPHOSPHONIC ACID
C37 H45 N4 O7 P
RHYFMOCFCFUTNH-GZNVFMSSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DTF IC50: 20 - 26 nM (100) BindingDB

N/A in BindingMoad
IC50: 20 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 20
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-03-24
  • Released Date: 2005-04-19
  • Deposition author(s): Ogura, K., Shiga, T., Yuzawa, S., Yokochi, M., Burke, T.R., Inagaki, F.

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance