1WL6

Mg-substituted form of E. coli aminopeptidase P


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.173
  • R-Value Work: 0.148

Literature

Macromolecules
Sequence Display for 1WL6

Classification: HYDROLASE

Total Structure Weight: 50442.31

Macromolecule Entities
Molecule Chains Length Organism Details
Xaa-Pro aminopeptidase A 440 Escherichia coli EC#: 3.4.11.9 IUBMB
Gene Name(s): pepP b2908 JW2876
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
XPE
Query on XPE

A 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE- 1,29-DIOL
DECAETHYLENE GLYCOL (Synonym)
C20 H42 O11
DTPCFIHYWYONMD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

A ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.173
  • R-Value Work: 0.148
  • Space Group: P 64 2 2

Unit Cell:

Length (Å) Angle (°)
a = 177.73 α = 90.00
b = 177.73 β = 90.00
c = 96.48 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-06-21
  • Released Date: 2005-08-16
  • Deposition author(s): Graham, S.C., Bond, C.S., Freeman, H.C., Guss, J.M.

Revision History

  • Version 1_0: 2005-08-16

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Advisory, Derived calculations, Version format compliance