1W77

2C-methyl-D-erythritol 4-phosphate cytidylyltransferase (IspD) from Arabidopsis thaliana


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.349
  • R-Value Work: 0.232

Literature

Macromolecules
Sequence Display for 1W77

Classification: TRANSFERASE

Total Structure Weight: 26190.10

Macromolecule Entities
Molecule Chains Length Organism Details
2C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE A 228 Arabidopsis thaliana EC#: 2.7.7.60 IUBMB
Fragment: CYTIDYLTRANSFERASE DOMAIN, RESIDUES 76-302
Mutation: K75M
Details: CHLOROPLAST TARGETING SEQUENCE REMOVED, COMPOUND STARTS AT RESIDUE 75
Gene Name(s): ISPD Gene View MCT MECT MEPCT At2g02500 T8K22.20
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C5P
Query on C5P

A CYTIDINE-5'-MONOPHOSPHATE
C9 H14 N3 O8 P
IERHLVCPSMICTF-XVFCMESISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CU
Query on CU

A COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.349
  • R-Value Work: 0.232
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 74.50 α = 90.00
b = 74.50 β = 90.00
c = 223.03 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-08-30
  • Released Date: 2006-02-21
  • Deposition author(s): Gabrielsen, M., Kaiser, J., Rohdich, F., Eisenreich, W., Bacher, A., Bond, C.S., Hunter, W.N.

Revision History

  • 2011-05-08
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance