1W62

PROLINE RACEMASE IN COMPLEX WITH ONE MOLECULE OF PYRROLE-2-CARBOXYLIC ACID (HEMI FORM)

Structural Biology Knowledgebase: 1W62 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.170

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1W62

Classification: RACEMASE

Total Structure Weight: 91703.49

Macromolecule Entities
Molecule Chains Length Organism Details
B-CELL MITOGEN A, B 414 Trypanosoma cruzi EC#: 5.1.1.4 IUBMB
Gene Name(s): PA45-A Tc00.1047053506795.80

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PYC
Query on PYC

A PYRROLE-2-CARBOXYLATE
C5 H4 N O2
WRHZVMBBRYBTKZ-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PYC N/A in BindingDB
Ka: 4.6e+06 M-1  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.170
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 136.02 α = 90.00
b = 89.38 β = 125.98
c = 84.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-08-12
  • Released Date: 2006-02-03
  • Deposition author(s): Buschiazzo, A., Alzari, P.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4