1W2B

TRIGGER FACTOR RIBOSOME BINDING DOMAIN IN COMPLEX WITH 50S

Structural Biology Knowledgebase: 1W2B SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.192

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1W2B

Classification: RIBOSOME

Total Structure Weight: 1473997.88


Macromolecule Entities
Molecule Chains Length Organism Details
50S RIBOSOMAL PROTEIN L39E 1 48 Haloarcula marismortui Gene Name(s): rpl39e rrnAC3112
50S RIBOSOMAL PROTEIN L44E LA, HLA, RIBOSOMAL PROTEIN L44E 2 92 Haloarcula marismortui Gene Name(s): rpl44e rrnAC3514
TRIGGER FACTOR 5 144 Escherichia coli EC#: 5.2.1.8 IUBMB
Fragment: N-TERMINAL RIBOSOME BINDING FRAGMENT, RESIDUES 1-144
Gene Name(s): tig b0436 JW0426
50S RIBOSOMAL PROTEIN L2P A 239 Haloarcula marismortui Gene Name(s): rpl2 rrnAC1608
50S RIBOSOMAL PROTEIN L3P B 337 Haloarcula marismortui Mutation: F310R
Gene Name(s): rpl3 rrnAC1611
50S RIBOSOMAL PROTEIN L4P C 246 Haloarcula marismortui Gene Name(s): rpl4 rrnAC1610
50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5 D 176 Haloarcula marismortui Gene Name(s): rpl5 rrnAC1598
50S RIBOSOMAL PROTEIN L6P E 177 Haloarcula marismortui Gene Name(s): rpl6 rrnAC1596
50S RIBOSOMAL PROTEIN L7AE F 119 Haloarcula marismortui Gene Name(s): rpl7ae rrnAC0103
50S RIBOSOMAL PROTEIN L10E G 348 Haloarcula marismortui Gene Name(s): rpl10 rpl10e rplP0 rrnAC1417
50S RIBOSOMAL PROTEIN L10E H 167 Haloarcula marismortui Gene Name(s): rpl10e rrnAC2357
50S RIBOSOMAL PROTEIN L13P I 145 Haloarcula marismortui Gene Name(s): rpl13 rrnAC0065
50S RIBOSOMAL PROTEIN L14P J 132 Haloarcula marismortui Gene Name(s): rpl14 rrnAC1602
50S RIBOSOMAL PROTEIN L15P K 164 Haloarcula marismortui Gene Name(s): rpl15 rrnAC1590
50S RIBOSOMAL PROTEIN L15E L 194 Haloarcula marismortui Gene Name(s): rpl15e rrnAC2065
50S RIBOSOMAL PROTEIN L18P M 186 Haloarcula marismortui Gene Name(s): rpl18 rrnAC1593
50S RIBOSOMAL PROTEIN L18E N 115 Haloarcula marismortui Gene Name(s): rpl18e rrnAC0064
50S RIBOSOMAL PROTEIN L19E O 148 Haloarcula marismortui Gene Name(s): rpl19e rrnAC1594
50S RIBOSOMAL PROTEIN L21E P 95 Haloarcula marismortui Gene Name(s): rpl21e rrnAC0260
50S RIBOSOMAL PROTEIN L22P HMAL22, HL23, RIBOSOMAL PROTEIN L22 Q 154 Haloarcula marismortui Gene Name(s): rpl22 rrnAC1606
50S RIBOSOMAL PROTEIN L23P R 84 Haloarcula marismortui Gene Name(s): rpl23p rrnAC1609
RIBOSOMAL PROTEIN L24 S 119 Haloarcula marismortui Gene Name(s): rpl24p rrnAC1601
50S RIBOSOMAL PROTEIN L24P T 66 Haloarcula marismortui Gene Name(s): rpl24e rrnAC0104
50S RIBOSOMAL PROTEIN L24E U 70 Haloarcula marismortui Gene Name(s): rpl29p rrnAC1604
50S RIBOSOMAL PROTEIN L30P V 154 Haloarcula marismortui Gene Name(s): rpl30p rrnAC1591
50S RIBOSOMAL PROTEIN L31E W 91 Haloarcula marismortui Gene Name(s): rpl31e rrnAC3113
50S RIBOSOMAL PROTEIN L32E X 240 Haloarcula marismortui Gene Name(s): rpl32e rrnAC1595
50S RIBOSOMAL PROTEIN L37AE Y 73 Haloarcula marismortui Gene Name(s): rpl37ae rrnAC1669
RIBOSOMAL PROTEIN L37E Z 56 Haloarcula marismortui Gene Name(s): rpl37e rrnAC0797.1
Macromolecule Entities
Molecule Chains Length Organism Details
23S RRNA 0 2922 Haloarcula marismortui
5S RRNA 9 122 Haloarcula marismortui

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

2, N, T, Y, Z CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

0 POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

0, 2, 3, B, I, J, K, L, M, N, P, Q, X CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

0, 3, 9, A, B, J MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

0, 3, 9, A, B, C, H, I, L, P, Q, R, S SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.192
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 210.75 α = 90.00
b = 298.87 β = 90.00
c = 574.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-07-01
  • Released Date: 2004-09-02
  • Deposition author(s): Ferbitz, L., Maier, T., Patzelt, H., Bukau, B., Deuerling, E., Ban, N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4