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Interactions of quinoxaline antibiotic and DNA: the molecular structure of a TRIOSTIN A-D(GCGTACGC) complex
 
 
DOI:10.2210/pdb1vs2/pdb   NDB ID: DDH010
1VS2
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: DNA
    Structure Weight: 3697.02
     
    Molecule:5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3'
    Polymer:1Type:polydeoxyribonucleotideLength:8
    Chains:A
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    ALA     ALANINE C3 H7 N O2 3DLigand Explorer Link out to Ligand Expos:ALA Link out to SuperLigands:ALA Link out to SuperHapten:ALA
    MVA     N-METHYLVALINE C6 H13 N O2 3DLigand Explorer Link out to Ligand Expos:MVA Link out to SuperLigands:MVA Link out to SuperHapten:MVA
    NCY     N-METHYLCYSTEINE C4 H9 N O2 S 3DLigand Explorer Link out to Ligand Expos:NCY Link out to SuperLigands:NCY Link out to SuperHapten:NCY
    QUI     2-CARBOXYQUINOXALINE C9 H6 N2 O2 3DLigand Explorer Link out to Ligand Expos:QUI Link out to SuperLigands:QUI Link out to SuperHapten:QUI
    SER     SERINE C3 H7 N O3 3DLigand Explorer Link out to Ligand Expos:SER Link out to SuperLigands:SER Link out to SuperHapten:SER
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    ALA ALANINE(type: lPeptideLinking) C3 H7 N O2 Link out to Ligand Expos:ALA Link out to SuperLigands:ALA Link out to SuperHapten:ALA 2D
    SER SERINE(type: lPeptideLinking) C3 H7 N O3 Link out to Ligand Expos:SER Link out to SuperLigands:SER Link out to SuperHapten:SER 2D
    MVA N-METHYLVALINE (parent: VAL)(type: lPeptideLinking) C6 H13 N O2 Link out to Ligand Expos:MVA Link out to SuperLigands:MVA Link out to SuperHapten:MVA 2D
     
     
Reset Layout
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Wang, A.H.-J.,   Ughetto, G.,   Quigley, G.J.,   Rich, A.

    Deposition:   1986-10-21
    Release:   2006-06-27
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   N/A
    View a histogram of Resolution Resolution[Å]: 2.00
    R-Value: 0.200 (obs.)
    R-Free: n/a
    Space Group: P 63 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 40.90 α = 90.00 
    b = 40.90 β = 90.00 
    c = 80.70 γ = 120.00