1VPS

POLYOMAVIRUS VP1 PENTAMER COMPLEXED WITH A DISIALYLATED HEXASACCHARIDE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 1VPS

Classification: VIRAL PROTEIN

Total Structure Weight: 165535.58

Macromolecule Entities
Molecule Chains Length Organism Details
POLYOMAVIRUS VP1 PENTAMER A, B, C, D, E 289 Mus musculus polyomavirus 1 Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SIA
Query on SIA

A, B, C, D, E O-SIALIC ACID
C11 H19 N O9
SQVRNKJHWKZAKO-YRMXFSIDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B, C, D, E N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAL
Query on GAL

A, B, C, D, E BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.177
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 221.50 α = 90.00
b = 221.50 β = 90.00
c = 99.80 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-03-07
  • Released Date: 1997-05-15
  • Deposition author(s): Stehle, T., Harrison, S.C.

Revision History

  • 2008-03-24
    Type: Version format compliance
  • 2011-07-13
    Type: Non-polymer description, Version format compliance