1VKH

CRYSTAL STRUCTURE OF A PUTATIVE SERINE HYDROLASE (YDR428C) FROM SACCHAROMYCES CEREVISIAE AT 1.85 A RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.143 
  • R-Value Observed: 0.145 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Crystal structure of an alpha/beta serine hydrolase (YDR428C) from Saccharomyces cerevisiae at 1.85 A resolution

Arndt, J.W.Schwarzenbacher, R.Page, R.Abdubek, P.Ambing, E.Biorac, T.Canaves, J.M.Chiu, H.J.Dai, X.Deacon, A.M.DiDonato, M.Elsliger, M.A.Godzik, A.Grittini, C.Grzechnik, S.K.Hale, J.Hampton, E.Han, G.W.Haugen, J.Hornsby, M.Klock, H.E.Koesema, E.Kreusch, A.Kuhn, P.Jaroszewski, L.Lesley, S.A.Levin, I.McMullan, D.McPhillips, T.M.Miller, M.D.Morse, A.Moy, K.Nigoghossian, E.Ouyang, J.Peti, W.S.Quijano, K.Reyes, R.Sims, E.Spraggon, G.Stevens, R.C.van den Bedem, H.Velasquez, J.Vincent, J.von Delft, F.Wang, X.West, B.White, A.Wolf, G.Xu, Q.Zagnitko, O.Hodgson, K.O.Wooley, J.Wilson, I.A.

(2005) Proteins 58: 755-758


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
putative serine hydrolase
A, B
273Saccharomyces cerevisiaeMutation(s): 8 
Gene Names: ydr428c
UniProt
Find proteins for Q04066 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q04066 
Go to UniProtKB:  Q04066
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ04066
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 41.967α = 90
b = 85.959β = 97.71
c = 70.479γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
RESOLVEmodel building
REFMACrefinement
RESOLVEphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-06-08
    Type: Initial release
  • Version 1.1: 2008-04-26
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.3: 2023-01-25
    Changes: Database references, Derived calculations