1VKH

CRYSTAL STRUCTURE OF A PUTATIVE SERINE HYDROLASE (YDR428C) FROM SACCHAROMYCES CEREVISIAE AT 1.85 A RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.143

Literature

Macromolecules
Sequence Display for 1VKH

Classification: HYDROLASE

Total Structure Weight: 63961.80

Macromolecule Entities
Molecule Chains Length Organism Details
putative serine hydrolase A, B 273 Saccharomyces cerevisiae Mutation: M1M, M60M, M106M, M130M, M137M, V161I, M180M, M189M, M203M
Gene Name(s): BNA7 YDR428C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 41.97 α = 90.00
b = 85.96 β = 97.71
c = 70.48 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-05-20
  • Released Date: 2004-06-08
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

  • 2008-04-26
    Type: Version format compliance
  • 2011-07-13
    Type: Advisory, Version format compliance