1UYP

THE THREE-DIMENSIONAL STRUCTURE OF BETA-FRUCTOSIDASE (INVERTASE) FROM THERMOTOGA MARITIMA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 1UYP

Classification: HYDROLASE

Total Structure Weight: 301432.84

Macromolecule Entities
Molecule Chains Length Organism Details
BETA-FRUCTOSIDASE A, B, C..., D, E, FA, B, C, D, E, F 432 Thermotoga maritima EC#: 3.2.1.26 IUBMB
Mutation: M1L, A108V, V179A
Gene Name(s): bfrA TM_1414
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

A CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, E, F SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C, D, E, F GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.177
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 94.48 α = 90.00
b = 114.67 β = 98.96
c = 130.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-03-02
  • Released Date: 2004-03-22
  • Deposition author(s): Alberto, F., Bignon, C., Sulzenbacher, G., Henrissat, B., Czjzek, M.
  • Previous versions: 1UTW

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4