1URQ

Crystal structure of neuronal Q-SNAREs in complex with R-SNARE motif of Tomosyn


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.165 
  • R-Value Observed: 0.166 

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This is version 1.4 of the entry. See complete history


Literature

Structural Basis for the Inhibitory Role of Tomosyn in Exocytosis

Pobbati, A.Razeto, A.Boddener, M.Becker, S.Fasshauer, D.

(2004) J Biol Chem 279: 47192

  • DOI: https://doi.org/10.1074/jbc.M408767200
  • Primary Citation of Related Structures:  
    1URQ

  • PubMed Abstract: 

    Upon Ca2+ influx synaptic vesicles fuse with the plasma membrane and release their neurotransmitter cargo into the synaptic cleft. Key players during this process are the Q-SNAREs syntaxin 1a and SNAP-25 and the R-SNARE synaptobrevin 2. It is thought that these membrane proteins gradually assemble into a tight trans-SNARE complex between vesicular and plasma membrane, ultimately leading to membrane fusion. Tomosyn is a soluble protein of 130 kDa that contains a COOH-terminal R-SNARE motif but lacks a transmembrane anchor. Its R-SNARE motif forms a stable core SNARE complex with syntaxin 1a and SNAP-25. Here we present the crystal structure of this core tomosyn SNARE complex at 2.0-A resolution. It consists of a four-helical bundle very similar to that of the SNARE complex containing synaptobrevin. Most differences are found on the surface, where they prevented tight binding of complexin. Both complexes form with similar rates as assessed by CD spectroscopy. In addition, synaptobrevin cannot displace the tomosyn helix from the tight complex and vice versa, indicating that both SNARE complexes represent end products. Moreover, data bank searches revealed that the R-SNARE motif of tomosyn is highly conserved throughout all eukaryotic kingdoms. This suggests that the formation of a tight SNARE complex is important for the function of tomosyn.


  • Organizational Affiliation

    Department of Neurobiology, Max-Planck-Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
M-TOMOSYN ISOFORM63Rattus norvegicusMutation(s): 0 
UniProt
Find proteins for Q9WU70 (Rattus norvegicus)
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UniProt GroupQ9WU70
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
SYNTAXIN 1A75Rattus norvegicusMutation(s): 0 
UniProt
Find proteins for P32851 (Rattus norvegicus)
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UniProt GroupP32851
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
SYNAPTOSOMAL-ASSOCIATED PROTEIN 2580Rattus norvegicusMutation(s): 0 
UniProt
Find proteins for P60881 (Rattus norvegicus)
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UniProt GroupP60881
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
SYNAPTOSOMAL-ASSOCIATED PROTEIN 2569Rattus norvegicusMutation(s): 0 
UniProt
Find proteins for P60881 (Rattus norvegicus)
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UniProt GroupP60881
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.165 
  • R-Value Observed: 0.166 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 126.054α = 90
b = 35.602β = 132.38
c = 93.541γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-08-26
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2019-07-24
    Changes: Data collection
  • Version 1.4: 2023-12-13
    Changes: Data collection, Database references, Other, Refinement description